doc

GlycoNAVI Documment

---

Project maintained by glyconavi Hosted on GitHub Pages — Theme by mattgraham

Database site

• https://glyconavi.org

Data Resources

• TCarp documantation

API

• https://sparqlist.glyconavi.org/

Tools

• https://glyconavi.org/Tools/

SPARQL Endpoint

• https://sparql.glyconavi.org/sparql

Identifier Hub

• https://glyconavi.org/hub/?id={id}

GlyTouCan ID

• GlycoNAVI: https://glyconavi.org/hub/?id=G03681DA

• GlycoNAVI: https://glyconavi.org/hub/?id=GN_G03681DA

• GlycoNAVI: https://glyconavi.org/hub/?id=GN_GlyTouCan_G03681DA

• GlycoNAVI: https://glyconavi.org/hub/?id=GN_GTC_G03681DA

PDB ID

• PDB: https://glyconavi.org/hub/?id=6D64

• PDB: https://glyconavi.org/hub/?id=PDB_6D64

Uniprot ID

• Uniprot: https://glyconavi.org/hub/?id=P03472

• Uniprot: https://glyconavi.org/hub/?id=Uniprot_P03472

identifiers.org

• GlycoNAVI CAN: https://identifiers.org/glyconavi/GN_CAN1

• PDB: https://identifiers.org/glyconavi/GN_PDB_6D64

• Uniprot: https://identifiers.org/glyconavi/GN_Uniprot_P03472

• GlyTouCan: https://identifiers.org/glyconavi/GN_GlyTouCan_G03681DA

WURCS Hub

• https://glyconavi.org/hub/?wurcs={WURCS}

  • WURCS: https://glyconavi.org/hub/?wurcs=WURCS=2.0/1,1,0/[a2112h-1b_1-5_2*NCC/3=O_6*OSO/3=O/3=O]/1/

Image Hub

• https://glyconavi.org/hub/img/?id={id}

  • STR: https://glyconavi.org/hub/img/?id=STR_3

  • GS: https://glyconavi.org/hub/img/?id=GS_187_G2

  • GTC: https://glyconavi.org/hub/img/?id=G69411IG

Resource

• Glycans
  • 3D structure: https://glyconavi.org/Glycans/3d/view/index.php?id=G00052MO
  • 3D structure with ctrl: https://glyconavi.org/Glycans/3d/view_ctrl/index.php?id=G00052MO
  • 3D structure(white): https://glyconavi.org/Glycans/3d/view_white/index.php?id=G00052MO

  • 3D structure with ctrl(white): https://glyconavi.org/Glycans/3d/view_ctrl_white/index.php?id=G00052MO

  • 3D structure (rdf and MD): https://public.glyconavi.org/pub/wurcs/3d/

• Proteins

Public data

• https://public.glyconavi.org/

• Software: https://public.glyconavi.org/soft/

  • GlycanBuilder2: https://public.glyconavi.org/#GlycanBuilder2_mac_apple

Release notes

• TODO: